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논문 출판 (Publications)

연구실 구성원들이 참여한 논문을 연도별로 정리하였습니다.
(※ 저자 순서는 원 논문과 동일하게 표기하였습니다.)

2026

  • Choi, S. et al. The HigB-like SehA toxin promotes non-replicating Salmonella inside macrophages by inhibiting ribonuclease III-dependent rRNA maturation. Nucleic Acids Res 54 (2026). https://doi.org/10.1093/nar/gkaf1534

  • Hong, S. R. et al. Development and characterization of nucleosomal DNA-based reference materials for the epidermal growth factor receptor gene liquid biopsy. Anal Bioanal Chem (2026). https://doi.org/10.1007/s00216-026-06475-5

  • Lee, H. J. et al. Ecological characteristics of the truncal skin mycobiome in acne and its association with doxycycline exposure. J Microbiol 64, e2511019 (2026). https://doi.org/10.71150/jm.2511019

2025

  • Cho, Y. J. et al. Live Malassezia strains from the mucosa of patients with ulcerative colitis: pathogenic potential and environmental adaptations. mBio 16(7): e0140025.

  • Heo, Y. et al. Advances in cancer genomics and precision oncology. Genes & Genomics 47(4): 399–416.

  • Kim, D., Shin, J., Cho, Y. J., Kronstad, J. W. & Jung, W. H. Acidic pH Reduces Fluconazole Susceptibility in Cryptococcus neoformans by Altering Iron Uptake and Enhancing Ergosterol Biosynthesis. Journal of Microbiology and Biotechnology 35: e2504007.

  • Kim, J., Park, J., Lee, E. J., Cho, Y. J. & Lee, J. S. Set1 is a critical transcriptional regulator in response to external signals in Candida albicans. Nucleic Acids Res 53 (2025). https://doi.org/10.1093/nar/gkaf632

  • Kim, J. H. et al. Gut microbiota dysbiosis by antibiotics increases FAdV-4 susceptibility and alters antiviral immunity in chickens. Veterinary Microbiology 309: 110692.

  • Kim, J. Y. et al. Fecal and Sputum Microbiota and Treatment Response in Patients With Mycobacterium abscessus Pulmonary Disease. Journal of Infectious Diseases 231(5): 1117–1126.

  • Kim, T. et al. Genome Sequences and Antifungal Susceptibility of Candida auris from a Patient with Atopic Dermatitis. Mycopathologia 190(6): 91.

  • Lee, J. M. et al. Acetic acid produced by Staphylococcus epidermidis remodels chromatin architecture and suppresses gene expression in Malassezia restricta. mBio 16, e0159225 (2025). https://doi.org/10.1128/mbio.01592-25

  • Oh, B. S. et al. SimpleViz: A user-friendly, web-based tool for publication-ready data visualization in bioinformatics. Molecules and Cells 48(7): 100222.

  • Park, S. et al. A periplasmic protein modulates the proteolysis of peptidoglycan hydrolases to maintain cell wall homeostasis in Escherichia coli. Proceedings of the National Academy of Sciences of the USA 122(4): e2418854122.

  • Park, S. H. et al. NFAT5 dictates crosstalk between intestinal epithelial regenerative capacity and microbiota in murine colitis models. J Clin Invest (2025). https://doi.org/10.1172/JCI183093

  • Tissera, K. et al. Expansion of cagA Copy Number in Helicobacter pylori During Co-Infection in a Mouse Model. Helicobacter 30, e70091 (2025). https://doi.org/10.1111/hel.70091

  • Youk, H. J. et al. Prediction of immunogenicity of Rh antigens using in silico analysis of binding to human leukocyte antigen peptide. PLOS ONE 20(10): e0334851.

2024

  • Choi, N. et al. A shared mechanism of multidrug resistance in laboratory-evolved uropathogenic Escherichia coli. Virulence 15(1): 2367648.

  • Kim, H. B., Cho, Y. J. & Choi, S. S. Metformin increases gut multidrug resistance genes in type 2 diabetes, potentially linked to Escherichia coli. Scientific Reports 14(1): 21480.

  • Oh, J. et al. Swd2/Cps35 determines H3K4 tri-methylation via interactions with Set1 and Rad6. BMC Biology 22(1): 105.

  • Park, J., Park, S., Kim, J., Cho, Y. J. & Lee, J. S. Ctr9 promotes virulence of Candida albicans by regulating methionine metabolism. Virulence 15(1): 2405616.

  • Woo, H. J. et al. N-terminal acetylation of Set1-COMPASS fine-tunes H3K4 methylation patterns. Science Advances 10(28): eadl6280.

  • Rintarhat, P. et al. Assessment of DNA extraction methods for human gut mycobiome analysis. Royal Society Open Science 11(1): 231129.

2023

  • Cha, S., Cho, Y. J., Lee, J. K. & Hahn, J. S. Regulation of acetate tolerance by small ORF-encoded polypeptides modulating efflux pump specificity in Methylomonas sp. DH-1. Biotechnology for Biofuels and Bioproducts 16(1): 114.

  • Kim, Y. M. et al. Mycobacterium potentiates protection from colorectal cancer by gut microbial alterations. Immunology 168(3): 493–510.

  • Lee, H., Cho, Y. J., Cho, A. & Kim, O. S. Environmental Adaptation of Psychrophilic Bacteria Subtercola spp. Isolated from Various Cryospheric Habitats. Journal of Microbiology 61(7): 663–672.

  • Lee, W. H. et al. Highly Efficient Nitrogen-Fixing Microbial Hydrogel Device for Sustainable Solar Hydrogen Production. Adv Mater 35, e2306092 (2023). https://doi.org/10.1002/adma.202306092

  • Yang, H. O., Cho, Y.-J., Lee, J. M. & Kim, K.-D. Transcriptional Interplay between Malassezia restricta and Staphylococcus Species Co-Existing in the Skin Environment. Journal of Microbiology and Biotechnology 33(3): 319–328.

  • Cho, Y. J. et al. Genome of Malassezia arunalokei and Its Distribution on Facial Skin. Microbiology Spectrum 10(3): e0050622.

2022

  • Cho, S. H., Cho, Y. J. & Park, J. H. The human symbiont Bacteroides thetaiotaomicron promotes diet-induced obesity by regulating host lipid metabolism. Journal of Microbiology 60(1): 118–127.

  • Cho, Y. J. et al. Genome of Malassezia arunalokei and Its Distribution on Facial Skin. Microbiology Spectrum 10(3): e0050622.

  • Lee, H. Y. et al. A mannose-sensing AraC-type transcriptional activator regulates cell-cell aggregation of Vibrio cholerae. NPJ Biofilms Microbiomes 8, 65 (2022). https://doi.org/10.1038/s41522-022-00331-x

  • Lee, J. H. et al. A mucin-responsive hybrid two-component system controls Bacteroides thetaiotaomicron colonization and gut homeostasis. Journal of Microbiology 60(2): 215–223.

2021

  • Cho, A., Cho, Y. J. & Kim, O. S. Draft Genome Sequence of the Chitin-Degrading Psychrotolerant Bacterium Pedobacter jejuensis TN23, Isolated from Antarctic Soil. Microbiol Resour Announc 10, e0052321 (2021). https://doi.org/10.1128/MRA.00523-21

  • Kang, D. et al. Functional dissection of the phosphotransferase system provides insight into the prevalence of Faecalibacterium prausnitzii in the host intestinal environment. Environmental Microbiology 23(8): 4726–4740.

  • Kim, Y., Roe, J. H., Park, J. H., Cho, Y. J. & Lee, K. L. Regulation of iron homeostasis by peroxide-sensitive CatR, a Fur-family regulator in Streptomyces coelicolor. Journal of Microbiology 59(12): 1083–1091.

  • Sung, J. Y. et al. A large-scale metagenomic study for enzyme profiles using the focused identification of the NGS-based definitive enzyme research (FINDER) strategy. Biotechnology and Bioengineering 118(11): 4360–4374.

2020

  • Do, E., Cho, Y. J., Kim, D., Kronstad, J. W. & Jung, W. H. A A Transcriptional Regulatory Map of Iron Homeostasis Reveals a New Control Circuit for Capsule Formation in Cryptococcus neoformans. Genetics (2020). https://doi.org/10.1534/genetics.120.303270

  • Noh, H. J. et al. Lichenicola cladoniae gen. nov., sp. nov., a member of the family Acetobacteraceae isolated from an Antarctic lichen. Int J Syst Evol Microbiol 70, 5918–5925 (2020).

  • Park, M. et al. A Novel Virus Alters Gene Expression and Vacuolar Morphology in Malassezia Cells and Induces a TLR3-Mediated Inflammatory Immune Response. mBio 11 (2020). https://doi.org/10.1128/mBio.01521-20

  • Kim, E. J. et al. The role of Rsv1 in the transcriptional regulation of genes involved in sugar metabolism for long-term survival. FEBS Journal 287(5): 878–896.

  • Park, M., Cho, Y. J., Lee, Y. W. & Jung, W. H. Genomic Multiplication and Drug Efflux Influence Ketoconazole Resistance in Malassezia restricta. Frontiers in Cellular and Infection Microbiology 10: 191.

  • Park, S. et al. Microbial Diversity in Moonmilk of Baeg-nyong Cave, Korean CZO. Frontiers in Microbiology 11: 613.